Adaptation of the closest tree method for a two state quartet to Jukes-Cantor tripod trees
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| Author: | |
|---|---|
| Format: | artículo original |
| Status: | Versión publicada |
| Publication Date: | 2023 |
| Description: | We aim to fit 4-state sequences of DNA characters from three species to a tripod tree, whose evolutionary model is Jukes-Cantor. For this purpose, we adapt the closest tree method used in the fit of 2-state sequences coming from four species to a quartet, where the states are purines and pyrimidines and the evolutionary model is CFN. The adaptation requires a multi stage methodology called ‘reduction process’. We take the frequencies of 2-state character patterns on the quartet as parameters and search for solutions to the fit. |
| Country: | Portal de Revistas UCR |
| Institution: | Universidad de Costa Rica |
| Repositorio: | Portal de Revistas UCR |
| Language: | Inglés |
| OAI Identifier: | oai:portal.ucr.ac.cr:article/50357 |
| Online Access: | https://revistas.ucr.ac.cr/index.php/matematica/article/view/50357 |
| Keyword: | Método del árbol más cercano Conjugación de Hadamard Ajuste de datos observados Reconstrucción filogenética Proceso de reducción Algoritmo Grobner cover Closest tree method Hadamard conjugation Phylogenetic reconstruction Observed data fitting Reduction process The Grobner cover algorithm |